PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G006100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 253aa    MW: 25452.5 Da    PI: 9.8951
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G006100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.23.5e-3931126295
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssgka 90 
                         +++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tg+++++as++  +++s +ss+++  +++a
  Brast04G006100.1.p  31 TVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGSGTTPASFStsSPSSLRSSSHSAAAAQA 121
                         689*************************************************************999998885444444444442222222 PP

                 TCP  91 aksaa 95 
                         a++++
  Brast04G006100.1.p 122 AQAQP 126
                         22222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.2093791IPR017887Transcription factor TCP subgroup
PfamPF036349.3E-3437123IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MTTRPDGGGG AEGKQLVPVA AAANGNGGAL TVRKAPSKDR HSKVDGRGRR IRMPIICAAR  60
VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGSGTTPAS FSTSSPSSLR SSSHSAAAAQ  120
AAQAQPLGAG GAHQHHFLPH AAPFILGKRV RGGEDDDDHG HANDQAAAAA VSMGPAPGFW  180
ALPARAADFG QLWSFAAAPE MMAAPAMAGE ASAARVGNYL PMGQGVNLIA SLGGPGPAAG  240
PPAGRAEEEA AR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G006100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748351e-107AK374835.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077J21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236169.21e-113transcription factor TCP7-like
SwissprotQ9FMX21e-68TCP7_ARATH; Transcription factor TCP7
TrEMBLA0A2K2D6041e-112A0A2K2D604_BRADI; Uncharacterized protein
STRINGOMERI02G35320.13e-82(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP194133100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.12e-43TCP family protein