PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G016300.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Nin-like

Protein Properties

Length: 144aa MW: 16574.1 Da PI: 9.7699

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G016300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.4	5.9e-23	26	74	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++e++s+yF +pik AA eL+++ T+LKr+CR++GI RW Rk+ks+ Brast04G016300.1.p 26 SLTFEQVSQYFGMPIKHAAEELKIGHTLLKRRCRELGILRWHGRKVKSM 74 79*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.573	5	94	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-18	26	73	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MGSQDESSMQ KTTENEGHLS SGSQPSLTFE QVSQYFGMPI KHAAEELKIG HTLLKRRCRE 60 LGILRWHGRK VKSMQTLIGY VQELGKDGPP ERSEKTQMAV QKLQQCKKLM EETLLQMNFM 120 WQVVYKEIFI RRREGLKSAE SEK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G016300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014756080.1	5e-42	protein RKD1
TrEMBL	A0A2K2D5V5	1e-40	A0A2K2D5V5_BRADI; Uncharacterized protein
STRING	BRADI3G59420.1	3e-41	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	3e-22	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Brast04G016300.1.p