PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G016400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 242aa    MW: 28510.7 Da    PI: 5.7542
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G016400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.72.7e-24124171552
              RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         +++e ls++F  pik+AA eL+v+lT LKr+CR++GI+RWPhRk++sl
  Brast04G016400.1.p 124 LTFELLSRHFCVPIKQAAAELKVGLTQLKRRCRELGIPRWPHRKMRSL 171
                         89********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.984107191IPR003035RWP-RK domain
PfamPF020421.4E-21124171IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MLQLQPMEDF SFYEEEGCYF QDFKFHYDEE YFPDFSLEYL LEESPFFSIQ HRLCTSTTAA  60
TRSYFWQEEL GVLFQGDILS LWAALDEEAR CKSEKELEQN LGRDVVEKTL TSNGPQNLQE  120
KPLLTFELLS RHFCVPIKQA AAELKVGLTQ LKRRCRELGI PRWPHRKMRS LQTLIDNVQE  180
LGRGTGEEGG MTKIVVEMLQ QTKKLMEERP WDVELDHSTK MLRQKCFKKN YKRRRLMAFE  240
G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231235KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G016400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756209.21e-141protein RKD1
TrEMBLA0A2K2D5T21e-140A0A2K2D5T2_BRADI; Uncharacterized protein
STRINGBRADI3G59410.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.15e-32RWP-RK domain-containing protein