PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G029900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 244aa    MW: 26360.5 Da    PI: 6.5418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G029900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-19106156155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++++GVr+++ +g+W+AeIrdp+    r  r +lg+f+ta +Aa+a++ a+++++g
  Brast04G029900.1.p 106 KKFRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAADAARAYDVAALEFRG 156
                         59********.**********82....48*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.09E-31106164No hitNo description
PROSITE profilePS5103224.922107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-30107165IPR001471AP2/ERF domain
PfamPF008473.4E-12107156IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-21107165IPR016177DNA-binding domain
SMARTSM003801.3E-35107170IPR001471AP2/ERF domain
PRINTSPR003675.2E-13108119IPR001471AP2/ERF domain
PRINTSPR003675.2E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVPRLDDGGF FFQLPNTEQE NSLFLRALIS VVSGEDAATA DAVPALHLEQ QQPSPPPVDA  60
TAMTGSSSEG EAEEQHCSPA PAASESFGAR KTMMMKKTTQ RGSGGKKFRG VRQRPWGKWA  120
AEIRDPRRAV RKWLGTFDTA ADAARAYDVA ALEFRGRRAK LNFPADAAAS AYAVSSSSPS  180
WAAADAQPQS FREKCCGSNA SSPVPVAEQQ GRLVRPTVAR EQEIWDGLQE IMMLDDGNFW  240
SKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-20105164363ATERF1
3gcc_A1e-20105164363ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G029900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748263e-67AK374826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570570.11e-102ethylene-responsive transcription factor ERF109
TrEMBLA0A0Q3INJ41e-100A0A0Q3INJ4_BRADI; Uncharacterized protein
STRINGBRADI3G58015.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-20related to AP2 6