PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G031900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 226aa    MW: 23632.1 Da    PI: 4.8202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G031900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-182675255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Brast04G031900.1.p 26 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLRG 75
                        69****998.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.54E-162585No hitNo description
SuperFamilySSF541712.68E-182686IPR016177DNA-binding domain
SMARTSM003803.4E-312691IPR001471AP2/ERF domain
PROSITE profilePS5103221.9442685IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-282685IPR001471AP2/ERF domain
PRINTSPR003675.2E-92738IPR001471AP2/ERF domain
PfamPF008471.8E-112775IPR001471AP2/ERF domain
PRINTSPR003675.2E-94965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGKGAPQQQH DEAPGNGNAR QGQGQQYKGV RMRSWGSWVS EIRAPNQKTR IWLGSYSTAE  60
AAARAYDAAL LCLRGSAAAP DLNFPLRLPF HLPAAAMSPK SIQRLAAAAA AASDANAASS  120
SFIPLLQPGA AHGATAASSA PCSWDAPLCS SPEPETANDS ADHRNHGAGD VDYGALADID  180
GFFPSPKCAG YGMMETDPCS TFFAPPPECW EEEGEISLWS FSSFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-142388266ATERF1
3gcc_A2e-142388266ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G031900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3770121e-103AK377012.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3145K04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316187.18e-78ethylene-responsive transcription factor ERF019
TrEMBLA0A0Q3I7I02e-76A0A0Q3I7I0_BRADI; Uncharacterized protein
STRINGOS02T0767800-001e-65(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.13e-24ERF family protein