PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G033600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 556aa    MW: 58614.2 Da    PI: 4.5923
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G033600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31328387159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r++ed +++++tYeg+Hnh+
  Brast04G033600.1.p 328 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCQEDMSILITTYEGTHNHP 387
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-32313389IPR003657WRKY domain
SuperFamilySSF1182901.7E-27321389IPR003657WRKY domain
PROSITE profilePS5081128.966323389IPR003657WRKY domain
SMARTSM007744.5E-38328388IPR003657WRKY domain
PfamPF031062.4E-27329387IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSSSSKRKRA AIDLERSDDD DGDRRAEEGS PAAEKEGEVK QGEEEGDAET KKVVVGVVVD  60
RASGDGSKEE IEFSTQLQQG EVPMEEDRKK SPSPDADEES DVAGPVAEDK HMVEAARPGE  120
GDGTGEEEDS RIIAMAQADE LSTMQEEMEK MKEENKMLRR VVDRTVRDYY ELQSKLAAYQ  180
KLPADDAPKE AEVFLSLGAT AGLATEQPAR RRPSAGSDET AEDGCRPGQD NLGLSLSLGA  240
SYEDQDKVGL QESAAAPGMA VSVEEDDEDG GNKAGYALLE SSKMMGTSAA PGPPDQVAAG  300
QQGQQHGVNA ANRKARVSVR VRCQGPTMND GCQWRKYGQK VAKGNPCPRA YYRCTVAPGC  360
PVRKQVQRCQ EDMSILITTY EGTHNHPLPI GATAMAASST ASSGDTFMLL SNNSSSISST  420
APQPSSSYLS PFLLNSSGSH YPSSAAQHLN GLFGNPSQQQ QLNKYPAWPP TSYPSSTHAA  480
GGSLGKRPFW TAGAGEDRPA AAENAGGTDP NKFSAAIAAA AIKNHAGKDG GGQQAGKEGE  540
SSSSKWGVVE SLPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22315391176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G033600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3632471e-111AK363247.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013L09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573034.10.0probable WRKY transcription factor 9
TrEMBLI1IER70.0I1IER7_BRADI; Uncharacterized protein
STRINGBRADI3G57710.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-50WRKY DNA-binding protein 9