PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G038700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YA
Protein Properties Length: 259aa    MW: 28332.6 Da    PI: 10.6426
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G038700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.31.1e-3298154158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         dep++VN+KQy++Il+RRq Rakle+++kl +k++kpylheSRh+hA++R+RgsgGrF
  Brast04G038700.1.p  98 DEPIFVNPKQYHGILRRRQLRAKLEAQNKL-IKNKKPYLHESRHRHAMKRARGSGGRF 154
                         79****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.6E-3796157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.79697157IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-2899154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-23100122IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.4E-23131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLLPASPSSL YASKGNSFGK TVDDDMGSTL NFNNKHPVFS SQNIDYGHPI TRMSYPYSDS  60
SSGLWAAYGS RAMFHTQIAG GGTSTNTRVP LPLELAEDEP IFVNPKQYHG ILRRRQLRAK  120
LEAQNKLIKN KKPYLHESRH RHAMKRARGS GGRFLNSKEL QQQQQQQQQS CTVSTKATAD  180
GANSSGSTHL RLGSGTAGDR TASSSKTIAS KESIKGVPGP APAFTMTHTL RKDDDFFQHH  240
GHHLSFSGPF GQASRRYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-2298159263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138147RHRHAMKRAR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G038700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570525.11e-160nuclear transcription factor Y subunit A-4 isoform X1
TrEMBLI1IEM51e-159I1IEM5_BRADI; Uncharacterized protein
STRINGBRADI3G57320.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132762833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.49e-37nuclear factor Y, subunit A8