PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G041800.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21335.6 Da    PI: 10.1859
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G041800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.6e-281059251
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        ri+n++nrqvtfskRr g+lKKA+ELS+LCdaev +++fsstg+ly++++
  Brast04G041800.2.p 10 RIDNSTNRQVTFSKRRSGLLKKAKELSILCDAEVGLVVFSSTGRLYDFCN 59
                        8***********************************************85 PP
2K-box782.4e-2676170498
               K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                         ++ + +++++ + +q+e+a L+++++nLq+++++l+Ge+L+ L + +Lq Le++Le sl++i+++K++ll+ +ieel +k   +++en++L
  Brast04G041800.2.p  76 QQPVVNATSEIKLWQREAASLRQQLHNLQESHKQLMGEELSGLGVTDLQGLENRLEMSLRSIKTRKDHLLRGEIEELHRKGSLIHQENMEL 166
                         44455788999******************************************************************************** PP

               K-box  95 rkkl 98 
                          +++
  Brast04G041800.2.p 167 YRRV 170
                         9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.595161IPR002100Transcription factor, MADS-box
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-32290IPR002100Transcription factor, MADS-box
CDDcd002651.10E-42277No hitNo description
PRINTSPR004048.1E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2584170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.95286179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTNRQVT FSKRRSGLLK KAKELSILCD AEVGLVVFSS TGRLYDFCNT  60
NMQAVIDRYT RAKEEQQPVV NATSEIKLWQ REAASLRQQL HNLQESHKQL MGEELSGLGV  120
TDLQGLENRL EMSLRSIKTR KDHLLRGEIE ELHRKGSLIH QENMELYRRV NVMTQQKMEL  180
CRQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-22182182MEF2C
5f28_B2e-22182182MEF2C
5f28_C2e-22182182MEF2C
5f28_D2e-22182182MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G041800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693240.0KF469324.1 Brachypodium distachyon MADS-box transcription factor 29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316126.11e-130MADS-box transcription factor 57-like isoform X7
RefseqXP_024316127.11e-131MADS-box transcription factor 57-like isoform X8
SwissprotQ6Z6W21e-103MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLI1IEJ21e-129I1IEJ2_BRADI; Uncharacterized protein
STRINGBRADI3G57017.31e-130(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.13e-85AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]