PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G044700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 225aa    MW: 23754.3 Da    PI: 4.498
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G044700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-171564255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr++k +g+Wv+eIr p++   r r++lg+++ +e+Aa+a +aa  +l+g
  Brast04G044700.1.p 15 KYKGVRRRK-WGKWVSEIRLPNS---RERVWLGSYDAPEQAARAFDAAFVCLRG 64
                        8*****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-271477IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-181577IPR016177DNA-binding domain
PROSITE profilePS5103221.9311575IPR001471AP2/ERF domain
CDDcd000183.58E-251577No hitNo description
PfamPF008477.7E-101563IPR001471AP2/ERF domain
SMARTSM003801.7E-281581IPR001471AP2/ERF domain
PRINTSPR003675.7E-91627IPR001471AP2/ERF domain
PRINTSPR003675.7E-93854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSSSEVGAEG IGGRKYKGVR RRKWGKWVSE IRLPNSRERV WLGSYDAPEQ AARAFDAAFV  60
CLRGAHAAGA DLNFPDSPPP PPPPHHLALD PQEVQAAALS HANRAPASAA AGSSPAAAAE  120
PTPAAAVAMD DDVLIGSCQG VGPPTEVLWE DGSNVIDWRT PAMAPPLFSP TGCWPGGSNT  180
AYDFLLQVPP SFGDEDMDIE EESGHGAVAS LWSFDPRSDS YFRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-13775472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11622KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G044700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236021.18e-98ethylene-responsive transcription factor ERF038
SwissprotQ84QC22e-33ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A0Q3I6Y12e-96A0A0Q3I6Y1_BRADI; Uncharacterized protein
STRINGLPERR02G28660.12e-69(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.11e-18ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]