PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G047300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CO-like
Protein Properties Length: 394aa    MW: 43192.2 Da    PI: 5.6435
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G047300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.7e-07435536
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                         C+ ++e++ +++C+++   lC +C  + H+ 
  Brast04G047300.1.p  4 LCDFCGEQRPTIYCRSDAASLCLSCDRNVHSA 35
                        6***************************9954 PP
2zf-B_box25.42.9e-084789541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                         C+++ ++++   C + ++ lC++C  ++H g       H++++
  Brast04G047300.1.p 47 LCDRCASQPAAVRCLEENTSLCQNCDWNGH-GatslaagHKRRT 89
                        7*****************************.5588888898766 PP
3CCT63.37.2e-22336379144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R  al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Brast04G047300.1.p 336 RGSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 379
                         6789*************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.855147IPR000315B-box-type zinc finger
SMARTSM003362.3E-10147IPR000315B-box-type zinc finger
CDDcd000212.71E-6435No hitNo description
PROSITE profilePS501199.2714390IPR000315B-box-type zinc finger
PfamPF006434.4E-54789IPR000315B-box-type zinc finger
CDDcd000211.03E-54790No hitNo description
SMARTSM003360.0714890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.309336378IPR010402CCT domain
PfamPF062031.4E-16336378IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGALCDFCGE QRPTIYCRSD AASLCLSCDR NVHSANALSR RHMRTLLCDR CASQPAAVRC  60
LEENTSLCQN CDWNGHGATS LAAGHKRRTI NCYSGCPSSE ELSRIWSFVM DIHTAADEPN  120
CEEGISMMSI NDSGVNNHYA AEQKGSMLDI ASTALTSYPP TGEKLKPLNS GDGMNLRPLA  180
THQPAGSVSV TPKVRCITDE NMFNDGSIYE DFCVDDADLT FENYEELFGT SHIQTEQLFD  240
DAGIDSYFET KEMPTAESKE ELKPMQPECS NVVSADSSLC IPSRHAISSI SPSFSGLTGE  300
SNAGDHQDCG VSPMLLMGEP PWLPPGSEGS FPSGSRGSAL TRYKEKKKRR KFDKKIRYAS  360
RKARADVRKR VKGRFVKAGE AYDYDPLSET RSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1345349KKKRR
2345350KKKRRK
3346350KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G047300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570474.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-119COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLI1IEC40.0I1IEC4_BRADI; Uncharacterized protein
STRINGBRADI3G56490.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.16e-92B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]