PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G055900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 186aa    MW: 19954.8 Da    PI: 4.8893
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G055900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.8e-054567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ykC+ C + F++   L  H+++H
  Brast04G055900.1.p 45 YKCGFCRRGFPTAQALGGHMNVH 67
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.4E-64271No hitNo description
Gene3DG3DSA:3.30.160.605.9E-44369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.914572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEELGREISK VGRRPPTGRE EEEEDKQRLL HDEDDEDDEG RRQPYKCGFC RRGFPTAQAL  60
GGHMNVHRRK EYRPGPRPAG SGGVICSYGE PPPAVEKTLA GGGHQQQPAC STPAAGGSSM  120
LFNGVERAPR ALRLFGHEIV DSGAAAGRGQ CYDGRNGDDD DHGGQGDVEE GELDLELRLG  180
AAGQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G055900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236875.13e-77transcriptional regulator SUPERMAN
TrEMBLI1IE237e-76I1IE23_BRADI; Uncharacterized protein
STRINGBRADI3G55760.11e-76(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145472224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-10C2H2 family protein