PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G075800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARR-B
Protein Properties Length: 683aa    MW: 74199.3 Da    PI: 6.6951
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G075800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.65.8e-28212265155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +pr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Brast04G075800.1.p 212 RPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 265
                         59*******************.********************************8 PP
2Response_reg76.69.2e-26231311109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+p+ +++l+++l++ +y +v+++ ++  al +l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++ge +++ + 
  Brast04G075800.1.p  23 VLAVDDDPVCLKVLETLLRRCQY-HVTATNQAAIALMMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGETKTVMKG 111
                         799********************.***************99999********************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +eel++
  Brast04G075800.1.p 112 ITHGACDYLLKPVRIEELRN 131
                         ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363923.3E-1871682IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23005.1E-4120174No hitNo description
SuperFamilySSF521729.53E-3520145IPR011006CheY-like superfamily
SMARTSM004484.1E-3021133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.52322137IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2323132IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.55E-2624136No hitNo description
PROSITE profilePS5129411.892209268IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-29210270IPR009057Homeodomain-like
SuperFamilySSF466894.12E-19210269IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-25213265IPR006447Myb domain, plants
PfamPF002492.9E-6214264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MRPEETRGVA ARGRDQFPVG MRVLAVDDDP VCLKVLETLL RRCQYHVTAT NQAAIALMML  60
RENRDMFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS GNGETKTVMK GITHGACDYL  120
LKPVRIEELR NIWQHVVRRK FSSPDYVNLD TYEECNKPPN ADSDYVYSQV TCGSPDQSGR  180
PNKKRKEYHS EDEGEDEEGN GQDDDDPSAP KRPRVVWSVE LHRKFVAAVN HLGIDKAVPK  240
RILELMNVEK LTRENVASHL QKYRLYLRRL SAVASQQAGV VAALGGKDHF LRMGAFEGLQ  300
GYQAFTSPAT LPSFSAHGLL SSPRNNQNAL VIQGVASSMS IQTASSSRTT NHSIVDANKY  360
HLSLPGNQQG SLAQGLVTSL GQAQLQQKWI NEETGDLSTI LSGNSRANGT PGMLQSITSS  420
PMLPQDLVEF THGKVDIQPS IRAPSVRLEH LEGAVGATSA QLESRVSQQS ATPLSGYSTS  480
RLLTNSSFNG ATRLGGTTSS ARTHFRPSDG PTVARDTNVG ASSFGGTTPL PSHTDQTYLS  540
FGSGNSFRQK MTERCGDSLL DPKLLWSSSQ LTSNFGLGAH SSMNQRTNIG SINSSHVART  600
PGQTSASPPV VVPQTKINAL FSEDLQMPRN ASDLSIPRLQ SELSSSTCSF DGLLNSIIKV  660
EKDDVSFGDD LGCDFYSLGA CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25208271164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G075800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570300.10.0two-component response regulator ORR23
RefseqXP_014756381.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLI1IDG80.0I1IDG8_BRADI; Two-component response regulator
STRINGBRADI3G54120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-103response regulator 12