PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G076500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 768aa    MW: 88441.2 Da    PI: 7.9404
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G076500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.48.4e-12112191190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         +fYn  + e+GF vr sks+ + + +   +++ vC + gk+ + + +         +tr+ C a +++ +++d+ w++++ + eHnH+l 
  Brast04G076500.1.p 112 NFYNLNSWETGFGVRFSKSRLNVQRK-KCMQEIVCCCAGKPMKGNCR---------STRCCCMALIRLLRSSDNGWYISEHRDEHNHPLL 191
                         69****************99995555.678899*******9997766.........9*******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-8112191IPR004330FAR1 DNA binding domain
PfamPF105512.0E-29313408IPR018289MULE transposase domain
PROSITE profilePS509669.631569605IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MFQGEIVSGG IDINALPAGY EQFGFEDEEG AAISAENTLA PVSDDIQHTQ TKMFPGSGRS  60
VRLGNVPEER KTNPNTPCAL EVSIRRYAEG NSGVVVNPSV GTTFNSLEEA YNFYNLNSWE  120
TGFGVRFSKS RLNVQRKKCM QEIVCCCAGK PMKGNCRSTR CCCMALIRLL RSSDNGWYIS  180
EHRDEHNHPL LTTCGERPHW PSHRHIDKYT KELVKHLREN NVSLRKVYNI IDSYFGSMEN  240
IPFTNRSLKT LCGDISRQHS DNDVVKTMEV FSKMVDADPD FKYTVQIDDD NRIKTLMWTS  300
GRCCEKYICF GDVITFDTTY RTNLYDMPFG LFVGVNNHFQ TIIFGGVLMR DEKEENFKWV  360
FREFMRMIGG KDKHPQTILT DQAHAIELAI AEVLPNTKHR WCKWHVLKKA KECLGALYSK  420
HSDFRTEFHR LVSDLFTEDE FEKGWATMLE KYGLQKQPFL TQIYEVERKW AKPYFRDVFC  480
SKMTSTQRSE SANHIYEEKH ITIEGLVLKA TVPIEIHASK VYTRTMFERF GIALCESGQY  540
VLDEVVPRNL YLARHTQVSF RQKWCKMLFR VRVNQETEEF DCECGCFEHT GMLCCHTLKV  600
IVHLGYVKIP ARYILKRWTK EARDMLPTRS TYPDSDLKPI YLEVIALAES NIMCYREAMY  660
GLLELKKKLI AMSKEKEGLG VEEREKETCM ETSTKGPKEV HDAVQPEDIS PEHNSGQVVS  720
KPSKKRRAGE PANKRDKPPC EESSKRTRFC SVCRLSGHKN TTCPQVF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G076500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DBZ70.0A0A2K2DBZ7_BRADI; Uncharacterized protein (Fragment)
STRINGEMT285400.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-71FAR1-related sequence 5