PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G090700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 98aa    MW: 10772.6 Da    PI: 4.6902
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G090700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-07349245
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                        ++WT+    l+  a + + ++   +W  +ar +g g++ +++k ++ 
  Brast04G090700.1.p  3 QSWTKRQNALFEAALAVFEKDmpdRWQNVARAVGDGKSVEDVKRHYE 49
                        78*******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.975156IPR017884SANT domain
SMARTSM007171.1E-4154IPR001005SANT/Myb domain
SuperFamilySSF466898.65E-10356IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MSQSWTKRQN ALFEAALAVF EKDMPDRWQN VARAVGDGKS VEDVKRHYEE LEKDVGDMES  60
AGGHQGSDNS ISGASSSNSN SWGSANEDRR ERNLNLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-15360965RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G090700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570194.15e-43protein RADIALIS-like 4
SwissprotQ6NNN04e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLI1ID141e-41I1ID14_BRADI; Uncharacterized protein
STRINGBRADI3G52807.12e-42(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-20RAD-like 6