PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G094200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

G2-like

Protein Properties

Length: 282aa MW: 31264.4 Da PI: 8.8812

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G094200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.8	1.2e-33	24	78	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+ Brast04G094200.1.p 24 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 78 79****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.716	21	81	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-32	21	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	24	79	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.43E-16	24	80	IPR009057	Homeodomain-like
Pfam	PF00249	8.7E-10	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	8.9E-25	123	167	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MMFEGMERAG YGVGAGVVLS RDPKPRLRWT PDLHERFVEA VTKLGGPDKA TPKSVLRLMG 60 MKGLTLYHLK SHLQKYRMGK QSKKDTGFET SRAAFATHGI SFSSATPPVV SSAGNNNMGE 120 TPLADALRYQ IEVQRKLHEQ LEVQKKLQMR IEAQGKYLQT ILEKAQKNLT YDSSGATNLE 180 ATRSQLTDFN LALSGFMDDA TQVCEQNNGD LAKVISEDNL RAGNLGFQLY HGVQDAEDVN 240 STRDEDLLLL DLNIKGGYDH RLSSHGMRRV DADLTVGQHR R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-21	24	80	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G094200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570169.2	0.0	myb family transcription factor PHL11
Swissprot	C0SVS4	1e-65	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0Q3I4W0	0.0	A0A0Q3I4W0_BRADI; Uncharacterized protein
STRING	MLOC_14844.3	1e-179	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-66	G2-like family protein

Link Out ? help Back to Top
Phytozome	Brast04G094200.1.p

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]