PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G104800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 220aa    MW: 23004.9 Da    PI: 9.8365
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G104800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC794.4e-25134177144
                 WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                         ++epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr rsrk++e
  Brast04G104800.1.p 134 EPEPGRCRRTDGKKWRCSRDVVQGHKYCERHVHRGRGRSRKPVE 177
                         69***************************************998 PP
2QLQ51.82.4e-1868104137
                 QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         s +T +Q q+L++Q+l+y+y+aa++PvP +L+++i+k
  Brast04G104800.1.p  68 SVLTFMQQQELEHQVLIYRYFAAGAPVPVHLVLPIWK 104
                         5689********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.7E-568104IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.61969104IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.1E-1170103IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.31134178IPR014977WRC domain
PfamPF088797.9E-21135177IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGEEKEADST QPPPSKLPRL SRGDPNAGAV TMAASSPLVL GLGLGLGGGG DSRGERQHDV  60
DTAADSKSVL TFMQQQELEH QVLIYRYFAA GAPVPVHLVL PIWKSVAASS FGPNRFPSLI  120
GLGSLCFDYR SSMEPEPGRC RRTDGKKWRC SRDVVQGHKY CERHVHRGRG RSRKPVEGVA  180
SAAAAQAAAH NGNASGALGG FSSGHGVLLA AHGASARAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G104800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0997371e-163FP099737.1 Phyllostachys edulis cDNA clone: bphyst023e19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235821.11e-120growth-regulating factor 10
SwissprotQ6EPP99e-93GRF10_ORYSJ; Growth-regulating factor 10
TrEMBLI1ICL41e-119I1ICL4_BRADI; Uncharacterized protein
STRINGBRADI3G51685.11e-120(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62213051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.11e-37growth-regulating factor 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]