PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G107000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Dof
Protein Properties Length: 379aa    MW: 38823 Da    PI: 8.5871
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G107000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3973134263
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                         keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Brast04G107000.1.p  73 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 134
                         7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-3171131IPR003851Zinc finger, Dof-type
PfamPF027013.6E-3375131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.90177131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MDAAHWHQGL GLAKPMEEMM MPGPGNANPN AANPNNQPPA PPPSGPEAAQ RAHPAAAPAA  60
AAGGAERKAR PQKEKAINCP RCNSTNTKFC YYNNYSLQQP RYFCKTCRRY WTEGGSLRNV  120
PVGGGSRKNK RSSSSSAAAA VSTSAAAAAA GTAPASKNPK LMLHEAGGGA HDLNLAFPHH  180
QGRVLHPSEF AAFPSLESSN VMAAANGRGG MQGAFSAMEL LRSTGCYVPL PQGMQLAGAM  240
PPEYGFALGP EFRMPPPAPH QQQQHHQQQQ QVQNMLGFSL DTGAGGGYGA GLQGAQESAA  300
AGRMLFPFED LKPGVVSAAG GATGGDQFEH GKAEQGQGQG QGGNNNSGGH ETLGFWNSSM  360
IGNGSSNDAG GAGGGGAW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G107000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824136e-91KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756972.11e-145dof zinc finger protein 2 isoform X1
SwissprotB9F1L81e-100DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLA0A0Q3QG611e-143A0A0Q3QG61_BRADI; Uncharacterized protein
STRINGBRADI3G51510.11e-132(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23693486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.42e-37Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]