PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G116200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 236aa    MW: 25198.1 Da    PI: 5.5955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G116200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-1955104255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p+    +  r++lg+f tae+Aa+a++aa+++++g
  Brast04G116200.1.p  55 TYRGVRMRA-WGKWVSEIREPR----KaSRIWLGTFETAEMAARAHDAAALAIKG 104
                         69****998.**********94....36***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-3055116IPR001471AP2/ERF domain
PfamPF008471.4E-1255104IPR001471AP2/ERF domain
PROSITE profilePS5103222.94555115IPR001471AP2/ERF domain
SMARTSM003806.8E-3355121IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1955115IPR016177DNA-binding domain
PRINTSPR003675.2E-115667IPR001471AP2/ERF domain
CDDcd000183.25E-1856117No hitNo description
PRINTSPR003675.2E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEEEKGALSP ASNASTTNFS NRSGCGSPMM ATSSSSDDSS GGGRKRPRRD LKHPTYRGVR  60
MRAWGKWVSE IREPRKASRI WLGTFETAEM AARAHDAAAL AIKGPRAAAA HLNFPELAND  120
LPRPATAAPE DVRAAAALAA HMDVARAPPP ADTGNAAEAD EPSSRPLPLP AWDGSIASVD  180
LALFDLPDFL HEFGFALPPP PSTTACDLSS WQHDVAATTD DFRFETAPLL LWEHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16521191176Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G116200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549954e-85AK354995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1014H03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572772.11e-129ethylene-responsive transcription factor ERF038
TrEMBLA0A0Q3FR951e-128A0A0Q3FR95_BRADI; Uncharacterized protein
STRINGGRMZM2G041839_P017e-60(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-24ERF family protein