PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G121000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 238aa    MW: 26702.5 Da    PI: 4.4599
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G121000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-184196256
                        T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        r++++ft+eq++ Le+ F++   ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Brast04G121000.1.p 41 RNKRRFTDEQVRSLESTFHSrRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 96
                        67889**************9899********************************9 PP
2HD-ZIP_I/II120.11.1e-3842134293
         HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++ L+++ydal+++ e+L++e+ +L+++l
  Brast04G121000.1.p  42 NKRRFTDEQVRSLESTFHSRRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFADLRAHYDALHARVESLKQEKLTLAAQL 132
                         79****************9999*******************************************************************99 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Brast04G121000.1.p 133 EE 134
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.43E-1831100IPR009057Homeodomain-like
PROSITE profilePS5007118.2043798IPR001356Homeobox domain
SMARTSM003897.0E-1839102IPR001356Homeobox domain
PfamPF000464.3E-164196IPR001356Homeobox domain
CDDcd000862.01E-164199No hitNo description
Gene3DG3DSA:1.10.10.602.6E-1941103IPR009057Homeodomain-like
PRINTSPR000315.6E-76978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000315.6E-77894IPR000047Helix-turn-helix motif
PfamPF021839.6E-1498139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MESDCQFLLA PPMYAAAADD DGCQFLQQQQ QQLMGGSSGE RNKRRFTDEQ VRSLESTFHS  60
RRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQL EHDFADLRAH YDALHARVES  120
LKQEKLTLAA QLEELKEKLN GRQDQSASSG AAEPDEVEVE HDKINNNNVG CVVEEEEAEG  180
AAPVVDVGSD ESAVGWYEYE RLAYGGAAAA LQPEPFCATP ELWETTTWPL VEWNAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G121000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674561e-136AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569986.11e-118homeobox-leucine zipper protein HOX24
SwissprotA2X7U14e-82HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLI1IC311e-117I1IC31_BRADI; Uncharacterized protein
STRINGBRADI3G50220.11e-118(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.26e-31homeobox 7