PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G121500.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 571aa    MW: 62362.4 Da    PI: 4.0472
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G121500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix89.92.7e-2837121186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         rW+k+ev aLi +r e++e  ++   k++lW+++s+ mr  g++rs+k+Ckekwen+nk++kk+ke++k+r +++ + cpyf+qle
  Brast04G121500.2.p  37 RWPKEEVDALIWLRMEKDELCQDLGGKGQLWDDISAGMRNMGYHRSSKRCKEKWENINKYFKKVKESKKRR-PQDAKMCPYFHQLE 121
                         8********************************************************************97.99999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.07E-2336101No hitNo description
PROSITE profilePS500907.0853794IPR017877Myb-like domain
PfamPF138371.8E-1937122No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MQHHIEALIA SMQPVVAGRL GGGESNGGNN NESGMPRWPK EEVDALIWLR MEKDELCQDL  60
GGKGQLWDDI SAGMRNMGYH RSSKRCKEKW ENINKYFKKV KESKKRRPQD AKMCPYFHQL  120
EDIYRKRQQF TMSGSGGSSS IAPGDTMVTV SEQAVLEQEN HQCELQGNIG DDFGMMGNDR  180
GGNSDAPSCN NGDTAMDTTV LDDNAINEEE NPQRELEDKI NNDLSMVENT EGKNLDTPPS  240
NGGDTTMDTV VLDDRSINKV EDKINNDLGM VENTERKNLD TPPSNGGDTA MDTVVLDDCS  300
INKEENPQRE LEVKIKNNLS IMGNGGGGDN LLAPLRNGGD TPMDINVVDN MVKNKENPMR  360
EFEGKISNNC SMMDNGGGDN LHAPLSNDDT TGDTTVLDES TINIEENLLA PPCNVGKMAI  420
DTAMLDESAI NEENPSCELE NKISIDFNKM DNGEGENLLS QPSNCDDTAV DTTMLDESAI  480
NKDENHWCEL EGNINNDFGM MGNKGGENLI AAPNDGGDTT IDTTVLDDNT VNNEQNPPRD  540
LEGKISTDFA MMINGGGENL LPHQEVGTIP *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G121500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235774.20.0LOW QUALITY PROTEIN: uncharacterized protein LOC100830336
TrEMBLA0A2K2D4D90.0A0A2K2D4D9_BRADI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-37Trihelix family protein