PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G122400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 370aa    MW: 38846 Da    PI: 8.5798
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G122400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19288322135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Brast04G122400.1.p 288 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 322
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-6839364IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.965282318IPR000679Zinc finger, GATA-type
SMARTSM004012.5E-18282336IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-14285345No hitNo description
Gene3DG3DSA:3.30.50.101.6E-15286320IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.95E-15287344No hitNo description
PROSITE patternPS003440288313IPR000679Zinc finger, GATA-type
PfamPF003202.5E-17288322IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MSSFAHHHGS LVEKEAGRMA ALRSSLRPCE AAEDMAAAAV AVGPAAWGAG LLGDGFLVED  60
LLDLEDLCEV DKEGGVLSEA APAGDEEQSG DSHGSSVVSY ELMPLLPTEM DMDLPAHDAE  120
ELEWVSRIMD DSLAELPPQP QLPAAPSAAW RRPRPRGLAA SSADPMRTPT ICALSTEASV  180
PVKAKRSKRS RATVWSLSGA SLSDSGSSST TTASSSGSSS TSLSSFFLLD SPTFVAAGSA  240
LSKLKKKSKK HGKLQKAKKR GRKPKHLASS PFLSSGGASV AVPGDRRCSH CGVQKTPQWR  300
AGPEGAKTLC NACGVRYKSG RLLPEYRPAC SPTFVGTIHS NSHRKVLEMR RKKDPVVEFE  360
AAAPAVASF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249KLKKKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G122400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569981.21e-157GATA transcription factor 5
TrEMBLA0A0Q3QFK41e-155A0A0Q3QFK4_BRADI; GATA transcription factor
STRINGBRADI3G50160.11e-160(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-39GATA transcription factor 5