PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G123800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

YABBY

Protein Properties

Length: 258aa MW: 27366.9 Da PI: 8.0234

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G123800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	210.2	7.1e-65	21	215	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.....................llee 74 s +eq+Cyv+Cn C+tilav vP +sl+k+v+vrCGhC++llsvnl+ aa + ++ ++ l Brast04G123800.1.p 21 SPTEQLCYVHCNCCDTILAVGVPCSSLYKTVAVRCGHCANLLSVNLRGLLLPPAAPPANQPQFSHSllsptsphgllddvafqtpslL-M- 109 578******************************************99955555444344444434455899999999988887642.2. PP YABBY 75 lkveeenlksnvekeesastsvssekl.........senedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsa 155 ++ +++nl+s ++++s ++ + +++e+e+ ++ +p +++PPekrqrvPsaynrfik+eiqrika+nPdi+hreafsa Brast04G123800.1.p 110 DQASGNNLSSGFAGRSNSSCASNMPAMpmpaatkpaQQQETEQtTKSAPSANKPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSA 200 23333333333333333333333333344788888744444440445566************************************* PP YABBY 156 aaknWahfPkihfgl 170 aaknWahfP+ihfgl Brast04G123800.1.p 201 AAKNWAHFPHIHFGL 215 ***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.6E-70	22	215	IPR006780	YABBY protein
SuperFamily	SSF47095	4.06E-8	155	208	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.7E-4	162	207	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSSSSSSSSA VFNLQDHLAP SPTEQLCYVH CNCCDTILAV GVPCSSLYKT VAVRCGHCAN 60 LLSVNLRGLL LPPAAPPANQ PQFSHSLLSP TSPHGLLDDV AFQTPSLLMD QASGNNLSSG 120 FAGRSNSSCA SNMPAMPMPA ATKPAQQQET EQTTKSAPSA NKPPEKRQRV PSAYNRFIKD 180 EIQRIKAGNP DITHREAFSA AAKNWAHFPH IHFGLMPDQG FKRSFVKAQD GAEDMLLKDS 240 LYAAAAAASA NMGVTPF*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G123800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003569970.1	1e-163	protein YABBY 4
Swissprot	A2X7Q3	1e-118	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-118	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	I1IC11	1e-162	I1IC11_BRADI; Uncharacterized protein
STRING	BRADI3G50050.1	1e-162	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-58	YABBY family protein

Link Out ? help Back to Top
Phytozome	Brast04G123800.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]