PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G127500.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 196aa MW: 20600.3 Da PI: 10.443

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G127500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117	2.3e-36	45	161	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.... 88 a++k++ +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++ +a ++++++ sss+s++ g Brast04G127500.1.p 45 APGKKSVKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTAPAAFVSSSAPSSSSSHH--Gallg 133 889*************************************************************99999777333333333322..13356 PP TCP 89 ...........................k 89 Brast04G127500.1.p 134 krprqdyeafwapalprqdawgfspleT 161 6666777778887766665555544321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-30	50	142	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.428	51	105	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MGSRDIAAAG SIFHVYQQHL PMAASTALAP AAAEAADGAL LLSPAPGKKS VKDRHSKVNG 60 RGRRVRMPIV CAARVFQLTR ELGLKSDGQT IEWLLRQAEP SILAATGSGT APAAFVSSSA 120 PSSSSSHHGA LLGKRPRQDY EAFWAPALPR QDAWGFSPLE TQAASYMPMA QAHHHSLSLV 180 AALSGAARRA EEETR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G127500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572742.1	4e-92	transcription factor TCP7
TrEMBL	I1IBW4	1e-90	I1IBW4_BRADI; Uncharacterized protein
STRING	BRADI3G49660.1	2e-91	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Brast04G127500.1.p