PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G151200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 283aa    MW: 30349.9 Da    PI: 8.4157
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G151200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.2e-184393155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y+GVr+++ +gr++AeIrdps+   ++r +lg+f+taeeAa a++ a++ ++g
  Brast04G151200.1.p 43 TQYRGVRRRP-WGRFAAEIRDPSS---KTRRWLGTFDTAEEAACAYDVAARVFRG 93
                        58********.**********954...4999*******************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.50E-2843102No hitNo description
PROSITE profilePS5103223.18244101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-3144103IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2244103IPR016177DNA-binding domain
SMARTSM003807.0E-3544107IPR001471AP2/ERF domain
PfamPF008471.6E-104493IPR001471AP2/ERF domain
PRINTSPR003677.7E-104556IPR001471AP2/ERF domain
PRINTSPR003677.7E-106783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDDEATNEQL HRTAHRHRGG GKRSPSAASG CDGCQLAAGS RHTQYRGVRR RPWGRFAAEI  60
RDPSSKTRRW LGTFDTAEEA ACAYDVAARV FRGAKARTNF PHEAAAAAGY LPWGPAPPPP  120
PQNAAAHPLN TILLHNLLMS SSPHGCLLLH HAGHGHAHAH ANPRPVRPPT PPPVASSGST  180
VTTAASTDDD DAWDCFLGRG AQETGLLQDV VESAFRGNQR PRDAFPAPSS ASAVLPRQEM  240
RHEEDEGEFT MLPQGLLQDM IQCPAFLQVA AAPTAMGRRR RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2137109780Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G151200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317233.11e-109ethylene-responsive transcription factor ESR2
TrEMBLA0A0Q3FKI91e-119A0A0Q3FKI9_BRADI; Uncharacterized protein
STRINGBRADI3G47610.11e-121(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.16e-23ERF family protein