PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G169000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 182aa    MW: 19542.8 Da    PI: 4.8747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G169000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-191465156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y+GVr++k +grWv+eIr p   g + r++lg+f+tae+Aa a++ a+++l+g+
  Brast04G169000.1.p 14 PHYRGVRRRK-WGRWVSEIRQP---GTKLRVWLGSFDTAEMAAVAHDVAALRLRGA 65
                        68*****998.**********8...325**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.46E-291473No hitNo description
PfamPF008476.6E-131464IPR001471AP2/ERF domain
PROSITE profilePS5103223.1431573IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-301573IPR001471AP2/ERF domain
SMARTSM003802.7E-341579IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-201574IPR016177DNA-binding domain
PRINTSPR003675.7E-101627IPR001471AP2/ERF domain
PRINTSPR003675.7E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MDDSLRAAAA PNSPHYRGVR RRKWGRWVSE IRQPGTKLRV WLGSFDTAEM AAVAHDVAAL  60
RLRGARDAQL NFPGSVGWLP QPPTTDPAEI RAAAAEAADR VRREPALVAA NNTAAIIGPG  120
ELVVDGEFDD ERLLESPKLW DQMAEAMLLD PPRWGQDGSG GGDAAAESSH AWPQGSLWDG  180
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161576566ATERF1
3gcc_A3e-161576566ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G169000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572623.33e-88ethylene-responsive transcription factor ERF022
SwissprotQ9FJ931e-30DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLI1IAL37e-86I1IAL3_BRADI; Uncharacterized protein
STRINGBRADI3G45997.11e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.15e-13ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]