PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G170400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 676aa    MW: 75232.6 Da    PI: 6.5117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G170400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.11.2e-21122222198
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++ +++aee+       ++++ +  +l+ +d++ ++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F +
  Brast04G170400.1.p 122 FCKTLTASDTSTHGGFSVLRRHAEEClppldmtQNPPWQ--ELVAKDLHANEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFLR 210
                         99****************************986555545..8************************************************3 PP

                         -SSSEE..EEEEE- CS
                  B3  85 dgrsefelvvkvfr 98 
                            +++ l+v+v+r
  Brast04G170400.1.p 211 --GDNGDLRVGVRR 222
                         ..377778999997 PP
2Auxin_resp108.38.4e-36248330183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a ++k+svGmRfkm+fe+++++err+sGt++gv  + ++ W +S WrsLk
  Brast04G170400.1.p 248 ASHAISTGTLFSVFYKPRTSRSEFVVSVNKYLEAKNNKMSVGMRFKMRFEGDEAPERRFSGTIIGVGGMATSLWADSDWRSLK 330
                         789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-44110251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-40118237IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-20120222No hitNo description
SMARTSM010191.9E-20122224IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701122224IPR003340B3 DNA binding domain
PfamPF023621.7E-19122222IPR003340B3 DNA binding domain
PfamPF065076.0E-34248330IPR010525Auxin response factor
PfamPF023092.7E-6534580IPR033389AUX/IAA domain
PROSITE profilePS5174524.865544626IPR000270PB1 domain
SuperFamilySSF542771.03E-12546621No hitNo description
PfamPF023099.3E-8591635IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MVNSGVAGAL GSSGDALYRE LWHACAGPLV TVPRQGERVY YFPQGHMEQL EASTDQQLDQ  60
HLPLFNLPSK ILCKVVNVEL RAETDSDEVY AQIMLQPETD RSEPTSADPE PHEPEKCNAH  120
SFCKTLTASD TSTHGGFSVL RRHAEECLPP LDMTQNPPWQ ELVAKDLHAN EWHFRHIFRG  180
QPRRHLLTTG WSVFVSSKRL VAGDAFIFLR GDNGDLRVGV RRLMRQLNNM PSSVISSHSM  240
HLGVLATASH AISTGTLFSV FYKPRTSRSE FVVSVNKYLE AKNNKMSVGM RFKMRFEGDE  300
APERRFSGTI IGVGGMATSL WADSDWRSLK VQWDEPSAIP RPDRVSPWEL EPLVATSIQP  360
SQPPARNKRA RPPASPSIAP EHPPVFGLWK SPAESAQTFS FSGLQRTQEL YPSPHQSPNS  420
IFSSSLNIGF KTKNEPATLT NNHFYWPIRD TRAESYSASI NKVPASRKQE PSTTGCRLFG  480
IEISSAVETT SPVVAVSGVC HEQPAASVDV ESDQLSQPSH VNKSDAPAAS SDRSPYETQS  540
RQVRSCTKVI MEGMAVGRAV DLTRLHGYED LHQKLEEMFD IQGELSASLQ KWKLVYTDDE  600
DDMMLVGDDP WSEFCSMVKR VYIYSYEEAK HLTPKAKLPV IIDAIKPSPS KPSREPDMPQ  660
SDMKNNAQVT DNNDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.033577359Auxin response factor 1
4ldw_A0.033577359Auxin response factor 1
4ldw_B0.033577359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G170400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235548.10.0auxin response factor 7
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A0Q3JNE20.0A0A0Q3JNE2_BRADI; Auxin response factor
STRINGBRADI3G45880.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]