PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G186900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 245aa    MW: 26317.4 Da    PI: 5.055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G186900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-183989155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a++ ++g
  Brast04G186900.1.p 39 PRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARTIRG 89
                        6899******.**********843...4***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.1E-113989IPR001471AP2/ERF domain
CDDcd000184.40E-293998No hitNo description
SuperFamilySSF541713.14E-214097IPR016177DNA-binding domain
PROSITE profilePS5103221.2984097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-294097IPR001471AP2/ERF domain
SMARTSM003801.2E-3240103IPR001471AP2/ERF domain
PRINTSPR003671.2E-84152IPR001471AP2/ERF domain
PRINTSPR003671.2E-86379IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MNFSFFSSSS SSSGKKSAAS KQRRQQEESG KNNNNNTTPR YLGVRRRPWG RYAAEIRDPA  60
TKERHWLGTF DTAEEAAIAY DRAARTIRGA SARTNFAYPD LPPGSSVTPY LSPDIPADQL  120
QQHHFYGNPQ IPALPLPAPA AYQIQGASGH HAGNNNESSY HDMSAAMSCG EVDMYAGGGG  180
DDGTWCDASE LDHLGGSYDE TAGASNGVYF EDGYVHSPMF SPMPAADEAV DAFQLGGSSS  240
SYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1840961471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G186900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058451e-84AP005845.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0461D06.
GenBankAP0149581e-84AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-84CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572568.11e-129ethylene-responsive transcription factor LEP
TrEMBLI1IA281e-128I1IA28_BRADI; Uncharacterized protein
STRINGBRADI3G44470.11e-128(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.14e-30ERF family protein