PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G196400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 304aa    MW: 33603.8 Da    PI: 9.1638
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G196400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.16.8e-11185225451
                 AP2   4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                         +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Brast04G196400.1.p 185 RGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 225
                         8**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.966159238IPR001471AP2/ERF domain
SMARTSM003802.2E-4183240IPR001471AP2/ERF domain
PfamPF008473.3E-5185226IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-7185228IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.2E-6190229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MENIHGCLTT GRVDKAKGLV SLSCHGKRQE GRNKGGRCEP PSLYPSPTSL TNFFFPPLVS  60
RPSVASPSFL LLPPPPPAAD DAGGSSSMVS LRRRRLLGFC SGKDSVDLPK PVENEKHVEA  120
AHSNVNPLSV HPLPFSEASD VLPESSNGSD SLKEEKNQYY PGKEIKRRKR HRRKQYVDQE  180
PCIKRGVYFK NMKWQAAIKV DKKQIHLGTV GTQDEAARLY DRAAFMCGRE PNFELSEEEK  240
SELEKYTWDD FLAMTRNTIN SKKQRKVGSL RRNKGDLSIG DTEMVNGGGS SHSDDGDVET  300
SAS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G196400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2501020.0AK250102.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf64c22, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024317810.11e-157ethylene-responsive transcription factor-like protein At4g13040 isoform X2
TrEMBLA0A0Q3FMY81e-134A0A0Q3FMY8_BRADI; Uncharacterized protein
STRINGBRADI3G43822.11e-145(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.23e-37ERF family protein