PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G198100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 171aa MW: 19404.5 Da PI: 10.0554

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G198100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.3	1.2e-13	34	100	23	90
FAR1 23 krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + +++ ++r +C++egk +++ ++ +++r ra++++gCka++ vk++ dg ++++++ eHnH+++ Brast04G198100.1.p 34 RSQHNAYRRYVRCTREGKYTTSVHD-GERQRGRASKKIGCKAHMGVKMNADGGCVIKSIHFEHNHQMS 100 345567899999*******9999.99999********************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.3E-11	34	100	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MQAEIKVQVI CLIGIRCCTN QMSHLPVPSI FGKRSQHNAY RRYVRCTREG KYTTSVHDGE 60 RQRGRASKKI GCKAHMGVKM NADGGCVIKS IHFEHNHQMS LSPSMLVFLH SHKRVNPTLQ 120 DYIKDLQLSN VKHVNIMSLL TRLSGGRDKL GCHNRDVLNM YESEECTQRV *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G198100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014757782.1	8e-55	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A2K2DQ08	1e-81	A0A2K2DQ08_BRADI; Uncharacterized protein
STRING	BRADI1G47460.1	1e-102	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7609	10	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-11	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Brast04G198100.1.p