PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G218000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 865aa    MW: 99366.5 Da    PI: 6.4483
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G218000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.1e-21217297291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fYn+YA  +GF v++ +++ +      +k ++vC+++gk+++++ +  ++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+l+p
  Brast04G218000.1.p 217 FYNTYALLTGFAVKRGTNYMR------KKFHLVCNRSGKPKPTRLN--RKRKRSSIEKTNCQAKVIVKLT-RGQWEFTTVRNEHNHPLCP 297
                         9****************9998......4678***********9988..99999*****************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-18217297IPR004330FAR1 DNA binding domain
PfamPF105518.0E-28415503IPR018289MULE transposase domain
PROSITE profilePS509669.112697733IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018708735IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 865 aa     Download sequence    Send to blast
MTEMVTELDI AEAHITEKSS KLTGTCIIAG DEGFHNPESR RKKAIKNAGT ATASASELSK  60
EPVGNQSMTE VRVRPADANS QELSSGSIEK NIEEPVANQS VTEARVQPAS DNSQELSSDS  120
IEKNTEGLLE DELDIQTNSV EHTLQQAEER NQLHGNMQIL EMPSNNISSE SDSDSSSGSD  180
SDSELGKYFY PKIEELENAR QPEPGMKFQT LEDAHGFYNT YALLTGFAVK RGTNYMRKKF  240
HLVCNRSGKP KPTRLNRKRK RSSIEKTNCQ AKVIVKLTRG QWEFTTVRNE HNHPLCPSAS  300
LTKFFLSHKD ISTEEKSLLK VLQKSRIPPN KVMKIFRRMR DIPLKKKDVT SLQYAEHRRT  360
ENSDVEATLK HLKELELRNP CFLYTKQTDE DNIARSIFWS DARLKLDYEI FGDFLLFDTT  420
YTTFRHNMPF TPIIGINNHG RTLLLGCALL DDEKSETFIW MFQKLLQMMG GKMPGSIITN  480
QDEAMAKAIA EVMPQVRHRF CKSDVMGKAQ EKISAFMAVR GNIKEELDSL VDNSLTETEF  540
EEGWISLMKR YDASENEYLR IMWKTRKSWV PVYFRQDFFP FVESHGRGER MNLLFKEYVL  600
TNDRIEKFIE RYEEIQKEIM ETDDEDRLQT GTVPSCFSLH PIEKHAANIY TRQIFLKVQR  660
EVLNSTAFNV HEVQRGAVYR LDKVFNYENP EFDRNYFEVI VEPGTNSFTC QCAKFTRDGI  720
LCCHIIRLFT QFGINEIPEQ YVLPRWTDKF KEEKAKQYKE KCSRKTENTM RYVKFMSKMA  780
DLGKRICGDG ARYNAVMLEV DKIEKISTAE GVNPELNELD SMCCGQGPRL QKHWHDSRAA  840
EAMSDMCGNQ DVQVQLGAHL QDEG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G218000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234143.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2K2CWE20.0A0A2K2CWE2_BRADI; Uncharacterized protein
STRINGBRADI3G10437.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-78FAR1-related sequence 5