PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G218000.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 832aa    MW: 95869.8 Da    PI: 6.7373
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G218000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1674.9e-21184264291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fYn+YA  +GF v++ +++ +      +k ++vC+++gk+++++ +  ++r++++ ++t+C+ak+ vk++ +g+we t++++eHnH+l+p
  Brast04G218000.2.p 184 FYNTYALLTGFAVKRGTNYMR------KKFHLVCNRSGKPKPTRLN--RKRKRSSIEKTNCQAKVIVKLT-RGQWEFTTVRNEHNHPLCP 264
                         9****************9998......4678***********9988..99999*****************.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-18184264IPR004330FAR1 DNA binding domain
PfamPF105517.6E-28382470IPR018289MULE transposase domain
PROSITE profilePS509669.112664700IPR007527Zinc finger, SWIM-type
SMARTSM005750.0018675702IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MTEMVTELDI AEAHITEKSS KLTGTCIIAG DEGFHNPESR RKKAIKNAGT ATASASELSK  60
EPVGNQSMTE VRVRPADANS QELSSDSIEK NTEGLLEDEL DIQTNSVEHT LQQAEERNQL  120
HGNMQILEMP SNNISSESDS DSSSGSDSDS ELGKYFYPKI EELENARQPE PGMKFQTLED  180
AHGFYNTYAL LTGFAVKRGT NYMRKKFHLV CNRSGKPKPT RLNRKRKRSS IEKTNCQAKV  240
IVKLTRGQWE FTTVRNEHNH PLCPSASLTK FFLSHKDIST EEKSLLKVLQ KSRIPPNKVM  300
KIFRRMRDIP LKKKDVTSLQ YAEHRRTENS DVEATLKHLK ELELRNPCFL YTKQTDEDNI  360
ARSIFWSDAR LKLDYEIFGD FLLFDTTYTT FRHNMPFTPI IGINNHGRTL LLGCALLDDE  420
KSETFIWMFQ KLLQMMGGKM PGSIITNQDE AMAKAIAEVM PQVRHRFCKS DVMGKAQEKI  480
SAFMAVRGNI KEELDSLVDN SLTETEFEEG WISLMKRYDA SENEYLRIMW KTRKSWVPVY  540
FRQDFFPFVE SHGRGERMNL LFKEYVLTND RIEKFIERYE EIQKEIMETD DEDRLQTGTV  600
PSCFSLHPIE KHAANIYTRQ IFLKVQREVL NSTAFNVHEV QRGAVYRLDK VFNYENPEFD  660
RNYFEVIVEP GTNSFTCQCA KFTRDGILCC HIIRLFTQFG INEIPEQYVL PRWTDKFKEE  720
KAKQYKEKCS RKTENTMRYV KFMSKMADLG KRICGDGARY NAVMLEVDKI EKISTAEGVN  780
PELNELDSMC CGQGPRLQKH WHDSRAAEAM SDMCGNQDVQ VQLGAHLQDE G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G218000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234143.20.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2K2CWE20.0A0A2K2CWE2_BRADI; Uncharacterized protein
STRINGBRADI3G10437.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-78FAR1-related sequence 5