PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G229500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 356aa    MW: 38077.4 Da    PI: 5.4672
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G229500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30167225259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp++++ t++geHnh 
  Brast04G229500.1.p 167 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPSTFILTFTGEHNHA 225
                         79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012176.3E-92642No hitNo description
PRINTSPR012176.3E-983104No hitNo description
Gene3DG3DSA:2.20.25.801.1E-30152227IPR003657WRKY domain
PROSITE profilePS5081133.453161227IPR003657WRKY domain
SuperFamilySSF1182901.7E-25163227IPR003657WRKY domain
SMARTSM007747.3E-36166226IPR003657WRKY domain
PfamPF031064.9E-25168224IPR003657WRKY domain
PRINTSPR012176.3E-9235260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEEEHYGNNW DLHAVVRFGC RRALSPPQPR PEPPIMPPRE KKAEVPLEKQ GADAGWCFPD  60
LGASDRAGFG EDANELLKAF FAPPPPPPTL KPLPPTQQQQ QKQKQEILQP LMMPAEAQAP  120
LQSQAAAAPA RAQPSGRQAS GAVPRSKRRK NQQKKVVCHV AADGVSSDVW AWRKYGQKPI  180
KGSPYPRGYY RCSSSKGCPA RKQVERSRAD PSTFILTFTG EHNHAAPTHR NSLAGTSRNK  240
FPSPSSSSAP PQPPPPSLLA AGEAAAAAHP SPPSASTAGL SPTTPLRTTS MEEEEDEEEE  300
DELLVEDMEM AGEDDLLFLS GADSEDGATP MSSLFDVDDP FLGSPWNGAP AGAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-18150228280Disease resistance protein RRS1
5w3x_D5e-18150228280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G229500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613701e-120BT061370.1 Zea mays full-length cDNA clone ZM_BFb0140H07 mRNA, complete cds.
GenBankHQ8587191e-120HQ858719.1 Zea mays clone UT1178 WRKY transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571185.11e-179WRKY transcription factor 22
TrEMBLI1HZD11e-178I1HZD1_BRADI; Uncharacterized protein
STRINGBRADI3G09810.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-50WRKY family protein