PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G243600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 194aa    MW: 20453 Da    PI: 11.1205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G243600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.7e-052447629
                        HHHHHHHHHHHHHHHHHHHCTSCC CS
                 HLH  6 nerErrRRdriNsafeeLrellPk 29
                        + +Er RR+++N  +++L  l+  
  Brast04G243600.1.p 24 KTVERVRRNQMNALYSRLDNLVRA 47
                        679***************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.98E-72493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.2E-72492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEMPPPPPPP PRRPAAAGGK PDRKTVERVR RNQMNALYSR LDNLVRAGGG APSPTPAATR  60
PERLGEAAAY ITQTAERVER LKERKRELNA RATTEVQAGS GSGSSQQLEV QAQHLGSGLH  120
AILVTGGPPS DDGASFHRAV RAVEEAGGGV QNAHFSVVAA RAVYTIHALV GEQPGSIERV  180
VQRLKEAVRG NGR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G243600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236341.18e-86transcription factor bHLH162
TrEMBLI1HZ052e-84I1HZ05_BRADI; Uncharacterized protein
STRINGBRADI3G08810.13e-85(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-07bHLH family protein