PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G243800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 246aa    MW: 25573.6 Da    PI: 6.3945
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G243800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-184491152
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                        + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa++ 
  Brast04G243800.1.p 44 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 91
                        57*****998.**********843...6*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-124491IPR001471AP2/ERF domain
CDDcd000184.40E-2044102No hitNo description
SMARTSM003805.6E-3645108IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2145102IPR016177DNA-binding domain
PROSITE profilePS5103223.11745102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-3145102IPR001471AP2/ERF domain
PRINTSPR003673.4E-104657IPR001471AP2/ERF domain
PRINTSPR003673.4E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MPEREVCSSP ASSSGGSGGA TSSSSPPASP TKRRRAREDG GGQPSYRGVR MRAWGKWVSE  60
IREPRKKSRI WLGTFPTPEM AARAHDAAAL VVKGPSAVLN FPGLAPALPR PASSSPRDVQ  120
AAAVRAAAMD MGHHQPAAAA ALSSPLSPSS APAAMMPQPA AISDAVDDLD AIFELPRLDD  180
DAGAGHVSSG GLTMADHHQR SWCDPVWMDD AQEDLFGFGF GLDAAVDQYH GWGAPSSVSA  240
LLWNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-16451021472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G243800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048572e-83AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149582e-83AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582812e-83AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010234077.21e-102ethylene-responsive transcription factor ERF039
TrEMBLI1HZ031e-100I1HZ03_BRADI; Uncharacterized protein
STRINGBRADI3G08790.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-27ERF family protein