PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G246700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 414aa    MW: 44316.8 Da    PI: 9.1407
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G246700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.69.9e-093413781954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe+   +yp+ +e+  LA++ gLt +qV +WF N R +
  Brast04G246700.1.p 341 FENfvRPYPQDSEKDMLAQRSGLTRTQVANWFINARVR 378
                         6766689*****************************88 PP
2BELL26.61.5e-092152821172
                BELL  11 kLlslleeVdkrYkqyveqlqtvissFeava......glgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          Ll +l+ +d++Y+++ +++q   + F+  a      g+g   + + +A +a+S  +r+L+ +i++ i
  Brast04G246700.1.p 215 ELLRMLQLMDEKYNKCLDEIQSTTAKFNGLAepgigiGIGIGGISAPFAHRAVSATYRALRRRITGEI 282
                         69**************************88744443367788999*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.7E-15152279IPR006563POX domain
PROSITE profilePS5007112.357319382IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-23321393IPR009057Homeodomain-like
CDDcd000867.09E-12322382No hitNo description
SuperFamilySSF466893.89E-15322390IPR009057Homeodomain-like
SMARTSM003899.0E-9322386IPR001356Homeobox domain
PfamPF059202.2E-15339378IPR008422Homeobox KN domain
PROSITE patternPS000270357380IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGSTSNPSFP PFGAEAMNAC FMASSSAGTP LPPPDHGGLC FGDAAADFGA QFSANNLMLA  60
SLASQLFAHP QPRGGHGFVG TRTLPPPEAE EMDSTYEVSG HSDAHAMAVR SPSSSKKPLC  120
DDWSSAQGSR AVSVYGQYQQ AARFRPVHFA VVVARSPYAP VAQQLLNDAA GRLLHGVATA  180
AAADDSLQAS SSSVVSSSNS HGARWGQGNH GVRGELLRML QLMDEKYNKC LDEIQSTTAK  240
FNGLAEPGIG IGIGIGGISA PFAHRAVSAT YRALRRRITG EIMAAAGGGP GQRAEPSGSW  300
ESAFIQKHLA AQQARRREQR SWRPQRGLPE KSVAVLKSWL FENFVRPYPQ DSEKDMLAQR  360
SGLTRTQVAN WFINARVRLW RPLIEELHEE LRRSSAAAPA MPMEHAVSQY VLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G246700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236337.21e-152homeobox protein ATH1
RefseqXP_024316333.11e-152homeobox protein ATH1
RefseqXP_024316334.11e-152homeobox protein ATH1
RefseqXP_024316335.11e-152homeobox protein ATH1
TrEMBLA0A0Q3F7D71e-150A0A0Q3F7D7_BRADI; Uncharacterized protein
STRINGBRADI3G08570.11e-168(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-40homeobox gene 1