PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G265300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 298aa    MW: 30955.7 Da    PI: 9.1146
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G265300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.52.7e-09255279126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +kt+lC +far G C +Gd C+FaHg
  Brast04G265300.1.p 255 FKTKLCGYFAR-GLCAHGDGCRFAHG 279
                         69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.4E-65784IPR000571Zinc finger, CCCH-type
SMARTSM003562.45885IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-55886IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3145886IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.82E-14150227IPR004088K Homology domain, type 1
SMARTSM003221.7E-9158228IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.4E-14159227IPR004088K Homology domain, type 1
PROSITE profilePS5008413.942159223IPR004088K Homology domain, type 1
PfamPF000131.7E-10161225IPR004088K Homology domain, type 1
CDDcd001052.68E-11163224No hitNo description
SMARTSM003561.3E-5254280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112254281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-12254285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8255285IPR000571Zinc finger, CCCH-type
PfamPF006428.1E-7255279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MLSLGDQLGP GEASNGKGAA WKWVPRSATS RGGGHGHGAA ESSSERAREP GSFQTGARTK  60
GKPCTKFFST AGCCYGEKCR FIHNFPGGYQ APADPPRSIS LGPAVPDGPL TPTYEREIGK  120
HMSKDNSVPP LREQRLTDHC TPQQAPTPGM ASAASFGASA TATISVDASL KGVIIGWGGV  180
NIKQVSRDSG AKVWIRDHES DTNLKYVELQ GTFDQIKNAS SMVMELIGIG GGDPSLSKDP  240
AAGGSHRGGG PGGSFKTKLC GYFARGLCAH GDGCRFAHGV SELRKMVVSP RDPSGGW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G265300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755911.11e-137zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R04e-79C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K2CVN21e-113A0A2K2CVN2_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G06957.11e-136(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2513945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-44C3H family protein