PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G265400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 349aa    MW: 36684.9 Da    PI: 9.8845
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G265400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08147170225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         k +lCr++  t  Ck Gd+C+FaH
  Brast04G265400.1.p 147 KSRLCRNYNTTEGCKWGDKCHFAH 170
                         679********************* PP
2zf-CCCH37.53.9e-12314339127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC +far G C yGd+C+FaHg+
  Brast04G265400.1.p 314 FKTKLCENFAR-GLCTYGDKCRFAHGE 339
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.97678106IPR000571Zinc finger, CCCH-type
SMARTSM003565.978105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-579106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-680104IPR000571Zinc finger, CCCH-type
PfamPF146081.486103No hitNo description
Gene3DG3DSA:4.10.1000.102.1E-12144175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-8144176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.159145173IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5147170IPR000571Zinc finger, CCCH-type
SMARTSM003560.19147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.4E-12210288IPR004088K Homology domain, type 1
SMARTSM003222.6E-10215285IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.1E-12215284IPR004088K Homology domain, type 1
PROSITE profilePS5008413.712216280IPR004088K Homology domain, type 1
CDDcd001059.43E-12218284No hitNo description
PfamPF000131.6E-8218281IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-14311344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-9312343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.234313340IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-8313339IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9314339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSMDNSTPPL KDEKTTGHYA AQPGCNPGMA TPAGFKASAT AKISVDTALT DAIIRRGRDN  60
VKLISLGRGL ESFQIGVGSK SKPCIKFFST IGCPFGEGCH FLHHFPGGHL AVVNMSNLGG  120
PTFAHPPPGI MPMRPAVPNG PSTSTVKSRL CRNYNTTEGC KWGDKCHFAH AETELGKHTF  180
MDSSVPPHMG PRPTSHFAPP AMPNPGMFTP ASFGASATAK ISVDASLAGA IIGRGGMNTK  240
LISQITGAKL GIRDHESDAS MKNIELQGTF DQIKNAGTKV RELIVSFGVN TAPPPGRNSA  300
GGSHLIGGVP RSSFKTKLCE NFARGLCTYG DKCRFAHGEN ERRNLSAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G265400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233968.20.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-132C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2K2CVN10.0A0A2K2CVN1_BRADI; Uncharacterized protein
STRINGBRADI3G06950.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-56C3H family protein