PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G265600.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 233aa    MW: 24170.3 Da    PI: 9.1237
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G265600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.5e-083257227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+lC+ +     Ck Gd+C+FaHg+
  Brast04G265600.2.p 32 KTRLCNKYNTAEGCKWGDKCHFAHGE 57
                        8***********************96 PP
2zf-CCCH35.32e-11198223127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC +f + G C +GdrC+FaHg+
  Brast04G265600.2.p 198 FKTKLCENFTK-GSCTFGDRCHFAHGE 223
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.2E-142760IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-82961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0753058IPR000571Zinc finger, CCCH-type
SMARTSM003560.0693057IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-53257IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.8E-1496172IPR004088K Homology domain, type 1
SMARTSM003221.4E-8100170IPR004087K Homology domain
PROSITE profilePS5008414.487101165IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.7E-15101169IPR004088K Homology domain, type 1
CDDcd001059.62E-13103165No hitNo description
PfamPF000131.2E-10103166IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.1E-16196228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-9197228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.009197224IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-8197223IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9198223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSNLGGPTFA HPPGRMPTGP AGPDGPPTPT VKTRLCNKYN TAEGCKWGDK CHFAHGEREL  60
GKHTFIDSSV PPHMGSRPTS HFAPPAMHNP GMVAPASFGA SATAKISVDG SLAGAIIGRG  120
GINTKQISRV TGAKLAIRDH ESDDSLKNIE LEGTFDQIKN ASAMVTDLIV SISGNNAPPP  180
AKNPAAVSHR GGGPGGNFKT KLCENFTKGS CTFGDRCHFA HGENELRKLA AV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G265600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571204.11e-160zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-121C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLI1HYA31e-159I1HYA3_BRADI; Uncharacterized protein
STRINGBRADI3G06940.11e-160(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-54C3H family protein