PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G269800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 207aa    MW: 21452.3 Da    PI: 6.7393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G269800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-192372255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +++GVr ++ +gr++AeIrdp    k++r++lg+f++ae+Aa+a++aa++ l+g
  Brast04G269800.1.p 23 RFRGVRKRP-WGRYAAEIRDPA---KKARVWLGTFDSAEDAARAYDAAARMLRG 72
                        69*******.**********83...36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-192280No hitNo description
SuperFamilySSF541712.42E-222381IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-312380IPR001471AP2/ERF domain
SMARTSM003808.1E-372386IPR001471AP2/ERF domain
PROSITE profilePS5103223.4062380IPR001471AP2/ERF domain
PfamPF008477.2E-132372IPR001471AP2/ERF domain
PRINTSPR003673.1E-102435IPR001471AP2/ERF domain
PRINTSPR003673.1E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRRGGAAAAA AMAAQGDGDA EARFRGVRKR PWGRYAAEIR DPAKKARVWL GTFDSAEDAA  60
RAYDAAARML RGPKARTNFP LCLAHHSQLP ASYPPYPLAA AAAVPPPVAV AAAWPASSSL  120
SSTVESFGVP RARPVLPPRP PPPTILDGDC HSDCGSSASV VDDDCADAAA SPSCQLLLPF  180
DLNLPPGCVG PGCDDDDELR LTALRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212481664ATERF1
3gcc_A3e-212481664ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G269800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233948.14e-85ethylene-responsive transcription factor 3
SwissprotQ9SXS83e-32ERF3_TOBAC; Ethylene-responsive transcription factor 3
TrEMBLA0A0Q3I0348e-84A0A0Q3I034_BRADI; Uncharacterized protein
STRINGBRADI3G06562.11e-86(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51232758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.19e-22ethylene responsive element binding factor 3