PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G274800.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 241aa MW: 25633.7 Da PI: 10.3697

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G274800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	25.1	3.8e-08	143	185	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 RqRKk+++ e ++ v +L+aeN +L +e+ l+ +++l +e+ Brast04G274800.1.p 143 RQRKKMRLPEVQQLVRSLTAENGSLHEEMRALQRACSALAKEN 185 9**************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-5	143	181	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MATDDDAVAA DIICSLRGAD LGGWTPPWSK RVEAAGELSW PAVARGKRSR RRSPAPAASE 60 GKKGRRCAAR SSPPSPLDYS AGSASLRSGA STSGGEDGGG GGGFCSPWRR RAAGPPPATT 120 KVESIRRPQL TFPAPPPRPT GQRQRKKMRL PEVQQLVRSL TAENGSLHEE MRALQRACSA 180 LAKENDKLEA RVEQRSNSQN AIALKEQKGK QQIDQQPPDD SFALPDLNLP AQDNADAVHC 240 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	148	RQRKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G274800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364210	3e-64	AK364210.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022L02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233917.1	1e-142	uncharacterized protein LOC100835852
TrEMBL	I1HY06	1e-140	I1HY06_BRADI; Uncharacterized protein
STRING	BRADI3G06160.1	1e-141	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51

Link Out ? help Back to Top
Phytozome	Brast04G274800.1.p