PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G275200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 167aa    MW: 17729.7 Da    PI: 8.4796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G275200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116787323
                        ETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                        C++Cg+ F ++  L  H++ H
  Brast04G275200.1.p 67 CHYCGREFYSSQALGGHQNAH 87
                        ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-66392No hitNo description
PROSITE profilePS5015710.8666592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGEPAEGGGL GGARLATARE RRGIFNDGGG AKASLPPVEL DLIGTVGAAE APPLGSPLAE  60
PRQLHGCHYC GREFYSSQAL GGHQNAHKRE RLAIRRGAFE ADADPRWERA SFGFLRMPSA  120
VEPAPGGSHY YYYCAGDERR RRPGVGGRSG DRRGSGDQEL DLTLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G275200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236296.12e-49zinc finger protein 7
TrEMBLA0A0Q3HZV03e-48A0A0Q3HZV0_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI3G06130.17e-49(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.12e-14zinc finger protein 3