PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G282200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 308aa    MW: 31997.7 Da    PI: 5.6476
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G282200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_151.42.4e-16138192360
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                         ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L + N    +  ++l++  ++ +
  Brast04G282200.1.p 138 DVKRMRRMVSNRESARRSRKRKQAHLVELETQVDQLRGDNA---SIFKQLTDANQQFT 192
                         579*************************************7...66677777777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.0E-17136200IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.703138190IPR004827Basic-leucine zipper domain
PfamPF001704.6E-14139190IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.57E-12139191No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-12140191No hitNo description
CDDcd147021.96E-22141191No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKKCASELEL EAFIRGRGAA AAAGAEQKLA AGAAHAPFGM FSAADLAGFG FADSNTLNGG  60
IHNHLWSQSP NLGARLPAVS TTIDSQSSIY AAASPTSATN LSMKENQGFG GTSGSDSDSE  120
SMFDMEGGLC DQSTNPTDVK RMRRMVSNRE SARRSRKRKQ AHLVELETQV DQLRGDNASI  180
FKQLTDANQQ FTTAVTDNRI LKSDVEALRA KVKLAEKMVA QGALSCGLGH LGLSPAALVP  240
DGLAGLDFLP GGGADDACFA SLSPAEQVQG SPMQSMASLE SLDHGGRMPG GGDVWGWDSN  300
SNGAMSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRSRKRK
2152159RRSRKRKQ
3154159SRKRKQ
4284291GGRMPGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that possesses broad binding specificity for DNA promoter elements with the core sequence 5'-ACGT-3'. May be involved in the regulation of genes expressed during seed development (PubMed:7919992). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269|PubMed:11133985, ECO:0000269|PubMed:7919992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G282200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3542770.0AK354277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1006E09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570405.10.0bZIP transcription factor RISBZ4
SwissprotQ6ETX01e-130RSBZ3_ORYSJ; bZIP transcription factor RISBZ3
TrEMBLI1HXT50.0I1HXT5_BRADI; Uncharacterized protein
STRINGBRADI3G05577.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20953796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.14e-40basic leucine zipper 9
Publications ? help Back to Top
  1. Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F
    A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif.
    J. Biol. Chem., 2001. 276(17): p. 14139-52
    [PMID:11133985]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Izawa T,Foster R,Nakajima M,Shimamoto K,Chua NH
    The rice bZIP transcriptional activator RITA-1 is highly expressed during seed development.
    Plant Cell, 1994. 6(9): p. 1277-87
    [PMID:7919992]