PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G296200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 193aa    MW: 19712.8 Da    PI: 5.2534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G296200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-182070256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr+++ +gr++AeIrdps+   ++ ++lg+f++a++Aa a++aa+++l+g+
  Brast04G296200.1.p 20 KYRGVRRRP-SGRYAAEIRDPSK---KTPIWLGTFDSAQDAALAYDAAARNLRGA 70
                        8********.7*********964...6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-202077IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-292078IPR001471AP2/ERF domain
SMARTSM003802.2E-322083IPR001471AP2/ERF domain
CDDcd000185.32E-162076No hitNo description
PfamPF008471.9E-112069IPR001471AP2/ERF domain
PROSITE profilePS5103220.9822077IPR001471AP2/ERF domain
PRINTSPR003672.9E-72132IPR001471AP2/ERF domain
PRINTSPR003672.9E-74359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRRARPGPPA PPGLGPEEVK YRGVRRRPSG RYAAEIRDPS KKTPIWLGTF DSAQDAALAY  60
DAAARNLRGA AARTNFPSPS SAAPPVAPAA PAVVAAAATS SHSSTVETWS GGNGNTGFLV  120
PSAAIGAPPA VEEDSRSYCG SSSSALCEDG ASASASASAV PSPQLPFDLN LPDPAADDEM  180
DWRCQPDTLL RL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-211386781Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G296200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650351e-78AK365035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H02.
GenBankJN6811931e-78JN681193.1 Hordeum vulgare subsp. vulgare ethylene responsive transcription factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801489.12e-57ethylene-responsive transcription factor 3-like
TrEMBLF2DMB76e-63F2DMB7_HORVV; Ethylene responsive transcription factor 4
STRINGBRADI3G04410.14e-56(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.14e-13ethylene responsive element binding factor 4