PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G296800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 159aa    MW: 16957.1 Da    PI: 10.4406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G296800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.51.9e-093582356
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++GV++ + +gr++A+I++        + +l +fgta e a+  +aa++ l+g+
  Brast04G296800.1.p 35 FRGVSRQR-SGRYRAQIKHL-----GITLYLSTFGTAHEDARGFDAAALHLRGA 82
                        79***776.8*********3.....4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-133495IPR001471AP2/ERF domain
PROSITE profilePS5103213.7883489IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-143490IPR001471AP2/ERF domain
CDDcd000183.67E-153591No hitNo description
SuperFamilySSF541711.11E-93589IPR016177DNA-binding domain
PRINTSPR003671.5E-53546IPR001471AP2/ERF domain
PRINTSPR003671.5E-57191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MAADQHDEAA GRKRISWGRM SKRKQKARPG ARAEFRGVSR QRSGRYRAQI KHLGITLYLS  60
TFGTAHEDAR GFDAAALHLR GAKAITNFEQ QPPPTPAAAA SNDVEESPMD SSGFPEVPAE  120
LGFLPYGILQ LPPVPAAGGR LQDQSLERVL AAGGAIAAA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G296800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236663.11e-33ethylene-responsive transcription factor 9
TrEMBLI1I6903e-32I1I690_BRADI; Uncharacterized protein
STRINGBRADI3G33670.15e-33(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3721823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-11ERF family protein