PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G297000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 370aa    MW: 39764.8 Da    PI: 9.0252
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G297000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.92.9e-14125174256
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr++   g++ A+I+d         ++ +lg+f+ta+eAa+a++aa+ +l+g+
  Brast04G297000.1.p 125 EYRGVRRR--GGKYTAQIWDaK-----GqTTAWLGSFDTAQEAARAYDAAAIALRGA 174
                         59***854..6*********55.....34*************************985 PP
2AP232.71.9e-10240290154
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                         sg++GV++ ++  ++ A+I+dp+    r+  +lg+f+ aeeAa a++ a+  l+
  Brast04G297000.1.p 240 SGFRGVYRSSSGRKYSARIWDPVL---RAERRLGTFDAAEEAAGAYDDAAVGLY 290
                         79*****9998888*******865...58999****************997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.122125184IPR001471AP2/ERF domain
PfamPF008476.2E-9125173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-19125184IPR001471AP2/ERF domain
SMARTSM003802.6E-17125190IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-13126183IPR016177DNA-binding domain
SuperFamilySSF541712.03E-13240299IPR016177DNA-binding domain
CDDcd000188.01E-16240299No hitNo description
SMARTSM003802.2E-15241305IPR001471AP2/ERF domain
PROSITE profilePS5103215.106241299IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-15242299IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLHACFGDRS PVPSWDAAHS PCRCILRCGC LRGEGEWKPD RWTAGNSEEP PSSTTHGTTY  60
WEEHLLLREL CFPTRPQGKN PKQELPCVQR ASFPLGAARW RRSATTTASP SPWKRKKGLA  120
EVGTEYRGVR RRGGKYTAQI WDAKGQTTAW LGSFDTAQEA ARAYDAAAIA LRGAAAAAAM  180
TNFKSPAAAA ATPLADDDIG ALVHGIGQKK KKKAPAPVMA SKSVHGAAAA PRPTKSTPRS  240
GFRGVYRSSS GRKYSARIWD PVLRAERRLG TFDAAEEAAG AYDDAAVGLY GARAITNFEQ  300
PPTAMANAGA EPSPMEVLND FPELTAPVFS ESLIPGPQVH HLLTDLPPAE WQQQVHELLH  360
GMDFADTVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G297000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236272.13e-88ethylene-responsive transcription factor ABI4
TrEMBLA0A0Q3LLQ77e-87A0A0Q3LLQ7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3720423