PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G297100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 120aa    MW: 13169.2 Da    PI: 11.7914
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G297100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-132069156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                        +g++GV++ + +gr++A+    +    r  ++ +lg+f++a eAa++++aa+ +l+g+
  Brast04G297100.1.p 20 TGFRGVCRQP-SGRYRAQ---TK----RlgATLHLGTFDSAREAARRYDAAAVRLRGA 69
                        69*******9.7******...52....234*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-152075No hitNo description
PfamPF008473.7E-92068IPR001471AP2/ERF domain
PROSITE profilePS5103214.8952176IPR001471AP2/ERF domain
SMARTSM003804.7E-142182IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-142177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-152276IPR001471AP2/ERF domain
PRINTSPR003672.4E-62233IPR001471AP2/ERF domain
PRINTSPR003672.4E-65878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MVATEEAAAG RRRKKKKDRT GFRGVCRQPS GRYRAQTKRL GATLHLGTFD SAREAARRYD  60
AAAVRLRGAK AITNFKFKRQ SPPPRVTAAP NDGETMDFGG FPEVPAELRL LPFGILQLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11016RRRKKKK
21017RRRKKKKD
31116RRKKKK
41117RRKKKKD
51217RKKKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G297100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236663.11e-48ethylene-responsive transcription factor 9
TrEMBLI1I6902e-47I1I690_BRADI; Uncharacterized protein
STRINGBRADI3G33670.14e-48(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3721823