PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G301100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 25211.4 Da PI: 10.64

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G301100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.2	5.7e-18	96	151	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k+ ++t+eq Lee F+ ++ +s+ e+++LA++l+L rqV vWFqNrRa+ k Brast04G301100.1.p 96 RKKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTK 151 79999*************************************************98 PP
2	HD-ZIP_I/II	107.9	7.3e-35	97	185	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLEesF++++ L++ +K++lar+L+l++rqv+vWFqnrRARtk+kq+E d++ L+r + +l+++n+ L++e +eLr+ Brast04G301100.1.p 97 KKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTKLKQTELDCDLLRRLCGRLTHDNALLRRELAELRS 185 59*************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-18	79	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.42E-18	81	154	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.686	93	153	IPR001356	Homeobox domain
SMART	SM00389	1.2E-13	95	157	IPR001356	Homeobox domain
Pfam	PF00046	2.2E-15	96	151	IPR001356	Homeobox domain
CDD	cd00086	6.34E-7	96	154	No hit	No description
PROSITE pattern	PS00027	0	128	151	IPR017970	Homeobox, conserved site
SMART	SM00340	1.8E-9	153	196	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSSVSTISSG AMGMAMEDSP PDQEQLVDTR LSLFSGAGMI SRPPPQPAQA LLPRAAEAPP 60 AGKRKRNKGS KQNEIRAAAM QHSDVEDDDD QGGARRKKKL RLTEEQAALL EESFRAHNVL 120 SHGEKQDLAR RLRLRARQVE VWFQNRRART KLKQTELDCD LLRRLCGRLT HDNALLRREL 180 AELRSSAAGS SSISAGSSSS SSSRLTAWNS DKCPSCSKVA GRTSYGAGLS L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	RRKKKL
2	94	100	RRKKKLR
3	145	153	RRARTKLKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G301100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003570938.2	3e-74	putative homeobox-leucine zipper protein HOX26
TrEMBL	I1HX94	7e-73	I1HX94_BRADI; Uncharacterized protein
STRING	BRADI3G03970.1	1e-73	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70920.1	2e-19	homeobox-leucine zipper protein 18

Link Out ? help Back to Top
Phytozome	Brast04G301100.1.p