PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G304000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-PHD
Protein Properties Length: 737aa    MW: 82219.7 Da    PI: 7.5758
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G304000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61.1e-08453497852
                         -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
            Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                          +  +e+L ++F+ +  p ++ +e+LA+klg++ +++  WF+N R
  Brast04G304000.1.p 453 PPAAVEVLRDVFAVDELPARDVKEKLATKLGISFEKIDKWFKNTR 497
                         567899*************************************99 PP
2PHD28.82.7e-10200253150
                         SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS.TBSSHHHHT CS
                 PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg.ewlCeeCke 50 
                         +C+ C++  s  ++++++C+ +Ck ++H+kC +++ ++     g  wlC+ C +
  Brast04G304000.1.p 200 ICSRCKSdeSVPDNKIIFCEgSCKMSYHQKCSEPPYDKILPTGGhGWLCKFCLC 253
                         6999**966666*******955*************9955554449*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.28E-11192257IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.3E-10197255IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.712198254IPR019787Zinc finger, PHD-finger
SMARTSM002496.7E-6200252IPR001965Zinc finger, PHD-type
PfamPF006281.2E-7200253IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590201251IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.607.5E-10439497IPR009057Homeodomain-like
PROSITE profilePS5007111.791443503IPR001356Homeobox domain
SMARTSM003892.6E-8445507IPR001356Homeobox domain
SuperFamilySSF466899.41E-10445509IPR009057Homeodomain-like
CDDcd000864.25E-8446507No hitNo description
PfamPF000463.8E-6452497IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MNTSENKSAC SIPRRSSRRR KQSSSELVSL SKRPSHRTTS SCYKPDQCSP KRTTRTVRNA  60
NLAKYIKNKY YRSPLSQRRS SSAVSGKTTT GPVRRRSRKR RRQNIDCDEA TRLERRARYL  120
LMKIKSEQNL LDAYSGDGWN GQSREKLKPE KELQRAKRQI IKSKIAIRDT IHQLDMYSSS  180
GNMDDSVMPP DEPVNPDNTI CSRCKSDESV PDNKIIFCEG SCKMSYHQKC SEPPYDKILP  240
TGGHGWLCKF CLCKMKILEA VNAHLGTSLT VTCPSKDIFK EATEHIDSED GPGEDWLSEY  300
SGDEDYDPEE NDVTSSSLGS GEERVSNESN CSGSPLYSPN DDIPGFISAD FTDAEGFCHA  360
NSHLEFDSGE DVTAEMVTYQ RPKRDVDYRR LNEEMFGKLA ENEKQSDDED WGVDRKKKRR  420
VNSAGGAKSV EGVSGVISNE NVQPQRRKLF RMPPAAVEVL RDVFAVDELP ARDVKEKLAT  480
KLGISFEKID KWFKNTRCAA LRDRKAEGNR HIAGPSKSSG KRVEKAEVSG NVDSVDNSYL  540
LPLSKTNETK PESNSRPVRR RLHNKGVSLC PTSEVKETTS PTIKHCSNTH PSHLADRNMN  600
TEDRVISQAD TGPSDDPFFD AILAYPNINT SDKVVSTGDL VTLADEPFLD AMLADSHVFY  660
TDRAVSREDV RGPSSDQPFL DVIENVCGLK HRLQRLEDML SSAAPGDTGT AKGDVENQLV  720
VLVPTAELKD KPQPGN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621SRRRKQ
297101RKRRR
3415419KKKRR
4415420KKKRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G304000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570921.10.0pathogenesis-related homeodomain protein
TrEMBLI1HX600.0I1HX60_BRADI; Uncharacterized protein
STRINGBRADI3G03747.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85502227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.12e-85pathogenesis related homeodomain protein A