PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G311900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 183aa    MW: 18644 Da    PI: 9.7253
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G311900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.51.1e-114081445
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         +r++r+ +NRe+ArrsR RK+  ++ L+  ++ L  eN   
  Brast04G311900.1.p 40 QRRAKRMLSNRESARRSRMRKQRHLDDLAAQAAHLRRENAHV 81
                        689************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.1E-1437101IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.5763981IPR004827Basic-leucine zipper domain
PfamPF001702.5E-94081IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.88E-104186No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-841113No hitNo description
CDDcd147028.94E-154290No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MASSSGSGSA TTTGSRSLSP SMAAAAAGAS AEEMRALMEQ RRAKRMLSNR ESARRSRMRK  60
QRHLDDLAAQ AAHLRRENAH VAAALGLTAR GLLAVDAENA VLRTQAAELA ARLASLNDIL  120
SCISANNSGS SNNSNTAAAA AVALTVAAAA AAGGDPLLLG GFDGALDDMF RSSPDLFMFQ  180
PC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15360RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G311900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708871e-115AK070887.1 Oryza sativa Japonica Group cDNA clone:J023064O22, full insert sequence.
GenBankAP0049971e-115AP004997.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0030G11.
GenBankAP0149581e-115AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233767.17e-79bZIP transcription factor 11
TrEMBLI1HWW62e-77I1HWW6_BRADI; Uncharacterized protein
STRINGBRADI3G02980.13e-78(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44593367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.13e-16G-box binding factor 6