PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G314200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 711aa    MW: 79499.8 Da    PI: 7.3733
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G314200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822154.86.5e-481012444144
              DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspes 92 
                         g++++++E+E++k+RER+RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl    a+  g+ + +s e+
  Brast04G314200.1.p 101 GEREREREKERTKLRERHRRSITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSPQPLlpPPAQFQGALQVTSMET 191
                         67899*******************************************************************9988899999999999999 PP

              DUF822  93 slq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144
                         +   ++l+s+a+ +p++s+ + +++++++spssl+s+ +a+++       + +
  Brast04G314200.1.p 192 PALaNALNSYAIGTPLDSQTSALQTDDSLSPSSLNSVVVAEQSIKNENYGNSC 244
                         998899*********************************99844433333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.7E-48101251IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.93E-163270703IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.806.9E-170270705IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.5E-82293665IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51308322IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51329347IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51351372IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51444466IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51517536IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51551567IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51568579IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51586609IPR001554Glycoside hydrolase, family 14
PRINTSPR007504.1E-51624646IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MFGLGQLCYI SIPASGLHSS LRFLAGSVGG RPSSPAALAS ADRRRRLRRA AMSTKHPHAH  60
PRDADPAASP PPAPPSRRAR GGFASSTPAA PAPPATTRRR GEREREREKE RTKLRERHRR  120
SITSRMLAGL RQHGNFPLPA RADMNDVLAA LARAAGWTVQ PDGTTFRSSP QPLLPPPAQF  180
QGALQVTSME TPALANALNS YAIGTPLDSQ TSALQTDDSL SPSSLNSVVV AEQSIKNENY  240
GNSCSANSLN CIGSDQLMRA SAVSAGDYTR TPYIPVYASL PMGIINCYCQ LVDPEALRAE  300
LRHLKSLNVD GVIVDCWWGV VEAWTPQKYE WSGYRDLFGI IKEFRLKVQV VLSFHGSGEC  360
ESGDLLISLP RWVMEIAQEN QDIFFTDREG RRNTECLSWG IDKERVLRGR TGIEVYFDFM  420
RSFHMEFRSL SEEGLVSAIE IGLGASGELR YPACTKKMGW RYPGIGEFQC YDRYMQKNLR  480
QSALKRGHLF WARGPDNAGY YNSRSHETGF FCDGGDYDSY YGRFFLNWYS GILVDHVDQV  540
LSLATLAFDG AEIVVKIPSI YWWYRTASHA AELTAGFYNP TNRDGYSPVF RMLKKHSVIL  600
KLVCYGPEFT VQENDEAFAD PEGLTWQVMN AAWDHGLSLS VESALPCLDG EMYPQILDIA  660
KPRNDPDRHH VSFFAYRQQP PFLLQRYVCF SELETFVKCM HGEDTQNFID *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-11927370311444Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G314200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755446.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLI1HWU70.0I1HWU7_BRADI; Beta-amylase
STRINGBRADI3G02800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]